Analysis of single MD

Job name: Example

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Flareplot frames range 1-1 / 200

NGL control:

Frame: 0 / 200
0 = PDB, 1-200 = DCD

Charts:

Job info

GS Mode: all
Peptide substrate: APP
User input sequence: VGSNKGAIIGLMVGGVVIATVIVITL*VMLKKKQY
Trimmed sequence: VGSNKGAIIGLMVGGVVIATVIVITL
Total length [ns]: 25
Membrane thickness [Å]: 31.0
SMD chain resid: E 33
SMD velocity [m/s]: 0.06
SMD k [kcal/mol/Å2]: 5.0
SMD (x y z) [Å]: (-3.76 -0.096 -8.898)
Mutations: